recipe bioconductor-oder

Optimising the Definition of Expressed Regions

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ODER.html

License

Artistic-2.0

Recipe

/bioconductor-oder/meta.yaml

The aim of ODER is to identify previously unannotated expressed regions (ERs) using RNA-sequencing data. For this purpose, ODER defines and optimises the definition of ERs, then connected these ERs to genes using junction data. In this way, ODER improves gene annotation. Gene annotation is a staple input of many bioinformatic pipelines and a more complete gene annotation can enable more accurate interpretation of disease associated variants.

package bioconductor-oder

Versions

1.0.0-0

Depends

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-dasper >=1.4.0,<1.5.0

• bioconductor-derfinder >=1.28.0,<1.29.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-megadepth >=1.4.0,<1.5.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-ggpubr

• r-ggrepel

• r-magrittr

• r-plyr

• r-purrr

• r-stringr

• r-tibble

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oder

and update with:

conda update bioconductor-oder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oder:<tag>

(see bioconductor-oder/tags for valid values for <tag>)

Download stats

Link to this page

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