- recipe bioconductor-oder
Optimising the Definition of Expressed Regions
- Homepage:
- License:
Artistic-2.0
- Recipe:
The aim of ODER is to identify previously unannotated expressed regions (ERs) using RNA-sequencing data. For this purpose, ODER defines and optimises the definition of ERs, then connected these ERs to genes using junction data. In this way, ODER improves gene annotation. Gene annotation is a staple input of many bioinformatic pipelines and a more complete gene annotation can enable more accurate interpretation of disease associated variants.
- package bioconductor-oder¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-dasper
>=1.7.0,<1.8.0
bioconductor-derfinder
>=1.32.0,<1.33.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-megadepth
>=1.8.0,<1.9.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-oder
and update with:
conda update bioconductor-oder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-oder:<tag>
(see bioconductor-oder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
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