recipe bioconductor-ogre

Calculate, visualize and analyse overlap between genomic regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/OGRE.html

License:

Artistic-2.0

Recipe:

/bioconductor-ogre/meta.yaml

OGRE calculates overlap between user defined genomic region datasets. Any regions can be supplied i.e. genes, SNPs, or reads from sequencing experiments. Key numbers help analyse the extend of overlaps which can also be visualized at a genomic level.

package bioconductor-ogre

Versions:

1.2.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-assertthat

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dt

• r-ggplot2

• r-shiny

• r-shinybs

• r-shinydashboard

• r-shinyfiles

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ogre

and update with:

conda update bioconductor-ogre

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ogre:<tag>

(see bioconductor-ogre/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ogre/README.html)