- recipe bioconductor-ogre
Calculate, visualize and analyse overlap between genomic regions
- Homepage:
- License:
Artistic-2.0
- Recipe:
OGRE calculates overlap between user defined genomic region datasets. Any regions can be supplied i.e. genes, SNPs, or reads from sequencing experiments. Key numbers help analyse the extend of overlaps which can also be visualized at a genomic level.
- package bioconductor-ogre¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-ogre
and update with:
conda update bioconductor-ogre
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ogre:<tag>
(see bioconductor-ogre/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ogre/README.html)