recipe bioconductor-omiccircos

High-quality circular visualization of omics data

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/OmicCircos.html

License:

GPL-2

Recipe:

/bioconductor-omiccircos/meta.yaml

Links:

biotools: omiccircos, doi: 10.4137/cin.s13495

OmicCircos is an R application and package for generating high-quality circular plots for omics data.

package bioconductor-omiccircos

(downloads) docker_bioconductor-omiccircos

versions:
1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0, 

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0

depends bioconductor-genomicranges:

>=1.58.0,<1.59.0

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-omiccircos

and update with::

   mamba update bioconductor-omiccircos

To create a new environment, run:

mamba create --name myenvname bioconductor-omiccircos

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-omiccircos:<tag>

(see `bioconductor-omiccircos/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-omiccircos/README.html)