- recipe bioconductor-omnipathr
OmniPath web service client and more
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/OmnipathR.html
- License:
MIT + file LICENSE
- Recipe:
A client for the OmniPath web service (https://www.omnipathdb.org) and many other resources. It also includes functions to transform and pretty print some of the downloaded data, functions to access a number of other resources such as BioPlex, ConsensusPathDB, EVEX, Gene Ontology, Guide to Pharmacology (IUPHAR/BPS), Harmonizome, HTRIdb, Human Phenotype Ontology, InWeb InBioMap, KEGG Pathway, Pathway Commons, Ramilowski et al. 2015, RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore, OmnipathR features a close integration with the NicheNet method for ligand activity prediction from transcriptomics data, and its R implementation `nichenetr` (available only on github).
- package bioconductor-omnipathr¶
-
- Versions:
3.5.25-0
,3.2.0-0
,3.0.0-0
,2.0.0-1
,2.0.0-0
,1.2.0-0
,1.0.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-omnipathr
and update with:
conda update bioconductor-omnipathr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-omnipathr:<tag>
(see bioconductor-omnipathr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-omnipathr/README.html)