recipe bioconductor-omnipathr

OmniPath web service client and more

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/OmnipathR.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-omnipathr/meta.yaml

A client for the OmniPath web service (https://www.omnipathdb.org) and many other resources. It also includes functions to transform and pretty print some of the downloaded data, functions to access a number of other resources such as BioPlex, ConsensusPathDB, EVEX, Gene Ontology, Guide to Pharmacology (IUPHAR/BPS), Harmonizome, HTRIdb, Human Phenotype Ontology, InWeb InBioMap, KEGG Pathway, Pathway Commons, Ramilowski et al. 2015, RegNetwork, ReMap, TF census, TRRUST and Vinayagam et al. 2011. Furthermore, OmnipathR features a close integration with the NicheNet method for ligand activity prediction from transcriptomics data, and its R implementation `nichenetr` (available only on github).

package bioconductor-omnipathr

(downloads) docker_bioconductor-omnipathr

Versions:

3.5.25-03.2.0-03.0.0-02.0.0-12.0.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-omnipathr

and update with:

conda update bioconductor-omnipathr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-omnipathr:<tag>

(see bioconductor-omnipathr/tags for valid values for <tag>)

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