recipe bioconductor-oncomix

This package helps identify mRNAs that are overexpressed in subsets of tumors relative to normal tissue. Ideal inputs would be paired tumor-normal data from the same tissue from many patients (>15 pairs). This unsupervised approach relies on the observation that oncogenes are characteristically overexpressed in only a subset of tumors in the population, and may help identify oncogene candidates purely based on differences in mRNA expression between previously unknown subtypes.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/oncomix.html

License

GPL-3

Recipe

/bioconductor-oncomix/meta.yaml

package bioconductor-oncomix

(downloads) docker_bioconductor-oncomix

Versions

1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oncomix

and update with:

conda update bioconductor-oncomix

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oncomix:<tag>

(see bioconductor-oncomix/tags for valid values for <tag>)