recipe bioconductor-opencyto

Hierarchical Gating Pipeline for flow cytometry data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/openCyto.html

License

Artistic-2.0

Recipe

/bioconductor-opencyto/meta.yaml

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

package bioconductor-opencyto

Versions

1.24.0-0, 1.22.2-0, 1.20.1-0

Depends

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-flowclust >=3.24.0,<3.25.0

• bioconductor-flowcore >=1.52.0,<1.53.0

• bioconductor-flowstats >=3.44.0,<3.45.0

• bioconductor-flowviz >=1.50.0,<1.51.0

• bioconductor-flowworkspace >=3.34.0,<3.35.0

• bioconductor-graph >=1.64.0,<1.65.0

• bioconductor-ncdfflow >=2.32.0,<2.33.0

• bioconductor-rbgl >=1.62.0,<1.63.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-clue

• r-data.table

• r-gtools

• r-ks

• r-lattice

• r-mass

• r-plyr

• r-r.utils

• r-rcolorbrewer

• r-rcpp

• r-rrcov

Required By

• bioconductor-cytoml

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-opencyto

and update with:

conda update bioconductor-opencyto

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-opencyto:<tag>

(see bioconductor-opencyto/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-opencyto/README.html)