recipe bioconductor-opencyto

Hierarchical Gating Pipeline for flow cytometry data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/openCyto.html

License

Artistic-2.0

Recipe

/bioconductor-opencyto/meta.yaml

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

package bioconductor-opencyto

Versions

2.4.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.0.0-0,  1.24.0-0,  1.22.2-0,  1.20.1-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-flowclust >=3.30.0,<3.31.0

• bioconductor-flowcore >=2.4.0,<2.5.0

• bioconductor-flowstats >=4.4.0,<4.5.0

• bioconductor-flowviz >=1.56.0,<1.57.0

• bioconductor-flowworkspace >=4.4.0,<4.5.0

• bioconductor-graph >=1.70.0,<1.71.0

• bioconductor-ncdfflow >=2.38.0,<2.39.0

• bioconductor-rbgl >=1.68.0,<1.69.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=9.3.0

• r-base >=4.1,<4.2.0a0

• r-clue

• r-data.table

• r-gtools

• r-ks

• r-lattice

• r-mass

• r-plyr

• r-r.utils

• r-rcolorbrewer

• r-rcpp

• r-rrcov

Required By

• bioconductor-cytoml

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-opencyto

and update with:

conda update bioconductor-opencyto

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-opencyto:<tag>

(see bioconductor-opencyto/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-opencyto/README.html)