recipe bioconductor-openprimer

An implementation of methods for designing, evaluating, and comparing primer sets for multiplex PCR. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected. A Shiny app providing a user interface for the functionalities of this package is provided by the ‘openPrimeRui’ package.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/openPrimeR.html

License

GPL-2

Recipe

/bioconductor-openprimer/meta.yaml

package bioconductor-openprimer

(downloads) docker_bioconductor-openprimer

Versions

1.4.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-openprimer

and update with:

conda update bioconductor-openprimer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-openprimer:<tag>

(see bioconductor-openprimer/tags for valid values for <tag>)