- recipe bioconductor-openprimerui
Shiny Application for Multiplex PCR Primer Design and Analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/openPrimeRui.html
- License:
GPL-2
- Recipe:
A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.
- package bioconductor-openprimerui¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.1-0
- Depends:
bioconductor-openprimer
>=1.20.0,<1.21.0
r-base
>=4.2,<4.3.0a0
r-dt
>=0.2
r-rmarkdown
>=1.0
r-shiny
>=1.0.2
r-shinybs
>=0.61
r-shinyjs
>=0.9
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-openprimerui
and update with:
conda update bioconductor-openprimerui
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-openprimerui:<tag>
(see bioconductor-openprimerui/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-openprimerui/README.html)