recipe bioconductor-openprimerui

Shiny Application for Multiplex PCR Primer Design and Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/openPrimeRui.html

License:

GPL-2

Recipe:

/bioconductor-openprimerui/meta.yaml

A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.

package bioconductor-openprimerui

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0

Depends:

• bioconductor-openprimer >=1.20.0,<1.21.0

• r-base >=4.2,<4.3.0a0

• r-dt >=0.2

• r-rmarkdown >=1.0

• r-shiny >=1.0.2

• r-shinybs >=0.61

• r-shinyjs >=0.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-openprimerui

and update with:

conda update bioconductor-openprimerui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-openprimerui:<tag>

(see bioconductor-openprimerui/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-openprimerui/README.html)