recipe bioconductor-organism.dplyr

dplyr-based Access to Bioconductor Annotation Resources

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Organism.dplyr.html

License

Artistic-2.0

Recipe

/bioconductor-organism.dplyr/meta.yaml

This package provides an alternative interface to Bioconductor ‘annotation’ resources, in particular the gene identifier mapping functionality of the ‘org’ packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the ‘TxDb’ packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

package bioconductor-organism.dplyr

Versions

1.14.0-0, 1.12.1-0, 1.10.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-annotationfilter >=1.10.0,<1.11.0

• bioconductor-biocfilecache >=1.10.0,<1.11.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• r-base >=3.6,<3.7.0a0

• r-dbi

• r-dbplyr

• r-dplyr >=0.7.0

• r-rsqlite

Required By

• bioconductor-ularcirc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-organism.dplyr

and update with:

conda update bioconductor-organism.dplyr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-organism.dplyr:<tag>

(see bioconductor-organism.dplyr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-organism.dplyr/README.html)