recipe bioconductor-organism.dplyr

dplyr-based Access to Bioconductor Annotation Resources

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Organism.dplyr.html

License:

Artistic-2.0

Recipe:

/bioconductor-organism.dplyr/meta.yaml

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

package bioconductor-organism.dplyr

Versions:

1.26.0-0,  1.22.1-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.1-0,  1.10.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationfilter >=1.22.0,<1.23.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dbi

• r-dbplyr

• r-dplyr >=0.7.0

• r-rlang

• r-rsqlite

• r-tibble

Required By:

• bioconductor-ularcirc

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-organism.dplyr

and update with:

conda update bioconductor-organism.dplyr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-organism.dplyr:<tag>

(see bioconductor-organism.dplyr/tags for valid values for <tag>)

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