recipe bioconductor-otubase

Provides structure and functions for the analysis of OTU data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/OTUbase.html

License

Artistic-2.0

Recipe

/bioconductor-otubase/meta.yaml

Links

biotools: otubase, doi: 10.1093/bioinformatics/btr196

Provides a platform for Operational Taxonomic Unit based analysis

package bioconductor-otubase

Versions

1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-0,  1.30.0-0, 

1.44.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-shortread >=1.52.0,<1.53.0

• r-base >=4.1,<4.2.0a0

• r-vegan

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-otubase

and update with:

conda update bioconductor-otubase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-otubase:<tag>

(see bioconductor-otubase/tags for valid values for <tag>)

Download stats

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