recipe bioconductor-otubase

Provides structure and functions for the analysis of OTU data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/OTUbase.html

License

Artistic-2.0

Recipe

/bioconductor-otubase/meta.yaml

Links

biotools: otubase, doi: 10.1093/bioinformatics/btr196

Provides a platform for Operational Taxonomic Unit based analysis

package bioconductor-otubase

Versions

1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-shortread >=1.46.0,<1.47.0

• r-base >=4.0,<4.1.0a0

• r-vegan

Required By

• bioconductor-mcagui

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-otubase

and update with:

conda update bioconductor-otubase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-otubase:<tag>

(see bioconductor-otubase/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-otubase/README.html)