recipe bioconductor-outrider

OUTRIDER - OUTlier in RNA-Seq fInDER

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/OUTRIDER.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-outrider/meta.yaml

Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.

package bioconductor-outrider

(downloads) docker_bioconductor-outrider

Versions:
1.16.0-01.12.0-21.12.0-11.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-0

1.16.0-01.12.0-21.12.0-11.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-01.2.0-11.0.2-01.0.1-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-outrider

and update with:

conda update bioconductor-outrider

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-outrider:<tag>

(see bioconductor-outrider/tags for valid values for <tag>)

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