- recipe bioconductor-packfinder
de novo Annotation of Pack-TYPE Transposable Elements
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/packFinder.html
- License:
GPL-2
- Recipe:
Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).
- package bioconductor-packfinder¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-packfinder
and update with:
conda update bioconductor-packfinder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-packfinder:<tag>
(see bioconductor-packfinder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-packfinder/README.html)