recipe bioconductor-packfinder

de novo Annotation of Pack-TYPE Transposable Elements

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/packFinder.html

License:

GPL-2

Recipe:

/bioconductor-packfinder/meta.yaml

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

package bioconductor-packfinder

Versions:

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• r-ape

• r-base >=4.1,<4.2.0a0

• r-kmer

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-packfinder

and update with:

conda update bioconductor-packfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-packfinder:<tag>

(see bioconductor-packfinder/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-packfinder/README.html)