- recipe bioconductor-padog
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
- Homepage
- License
GPL (>= 2)
- Recipe
- Links
biotools: padog, doi: 10.1186/1471-2105-13-136
This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.
- package bioconductor-padog¶
-
- Versions
1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-hgu133a.db
>=3.13.0,<3.14.0
bioconductor-hgu133plus2.db
>=3.13.0,<3.14.0
bioconductor-keggdzpathwaysgeo
>=1.32.0,<1.33.0
bioconductor-keggrest
>=1.34.0,<1.35.0
bioconductor-limma
>=3.50.0,<3.51.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-padog
and update with:
conda update bioconductor-padog
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-padog:<tag>
(see bioconductor-padog/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-padog/README.html)