recipe bioconductor-pagerank

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis






Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

package bioconductor-pagerank

(downloads) docker_bioconductor-pagerank



depends bioconductor-genomicranges:


depends bioconductor-motifmatchr:


depends r-base:


depends r-igraph:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-pagerank

and update with::

   mamba update bioconductor-pagerank

To create a new environment, run:

mamba create --name myenvname bioconductor-pagerank

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-pagerank/tags`_ for valid values for ``<tag>``)

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