recipe bioconductor-panelcn.mops

CNV detection tool for targeted NGS panel data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/panelcn.mops.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-panelcn.mops/meta.yaml

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

package bioconductor-panelcn.mops

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends

• bioconductor-cn.mops >=1.34.0,<1.35.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-panelcn.mops

and update with:

conda update bioconductor-panelcn.mops

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-panelcn.mops:<tag>

(see bioconductor-panelcn.mops/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-panelcn.mops/README.html)