recipe bioconductor-panelcn.mops

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/panelcn.mops.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-panelcn.mops/meta.yaml

package bioconductor-panelcn.mops

Versions

1.4.0-0

Depends

• bioconductor-cn.mops >=1.28.0,<1.29.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-panelcn.mops

and update with:

conda update bioconductor-panelcn.mops

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-panelcn.mops:<tag>

(see bioconductor-panelcn.mops/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-panelcn.mops/README.html)