recipe bioconductor-panelcn.mops

CNV detection tool for targeted NGS panel data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/panelcn.mops.html

License:

LGPL (>= 2.0)

Recipe:

/bioconductor-panelcn.mops/meta.yaml

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

package bioconductor-panelcn.mops

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-cn.mops >=1.44.0,<1.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-panelcn.mops

and update with:

conda update bioconductor-panelcn.mops

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-panelcn.mops:<tag>

(see bioconductor-panelcn.mops/tags for valid values for <tag>)

Download stats

Link to this page

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