recipe bioconductor-pasillabamsubset

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from “Pasilla” experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

Homepage

https://bioconductor.org/packages/3.9/data/experiment/html/pasillaBamSubset.html

License

LGPL

Recipe

/bioconductor-pasillabamsubset/meta.yaml

package bioconductor-pasillabamsubset

(downloads) docker_bioconductor-pasillabamsubset

Versions

0.22.0-1, 0.22.0-0, 0.20.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pasillabamsubset

and update with:

conda update bioconductor-pasillabamsubset

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pasillabamsubset:<tag>

(see bioconductor-pasillabamsubset/tags for valid values for <tag>)