recipe bioconductor-path2ppi

Prediction of pathway-related protein-protein interaction networks

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Path2PPI.html

License

GPL (>= 2)

Recipe

/bioconductor-path2ppi/meta.yaml

Links

biotools: path2ppi

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

package bioconductor-path2ppi

(downloads) docker_bioconductor-path2ppi

Versions

1.18.0-01.16.0-01.14.0-11.14.0-01.12.0-01.10.0-01.8.0-01.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-path2ppi

and update with:

conda update bioconductor-path2ppi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-path2ppi:<tag>

(see bioconductor-path2ppi/tags for valid values for <tag>)