recipe bioconductor-pchicdata

Promoter Capture Hi-C data

Homepage

https://bioconductor.org/packages/3.10/data/experiment/html/PCHiCdata.html

License

Artistic-2.0

Recipe

/bioconductor-pchicdata/meta.yaml

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

package bioconductor-pchicdata

Versions

1.14.0-0, 1.12.0-1, 1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-1, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends

• bioconductor-chicago >=1.14.0,<1.15.0

• curl >=7.65.3,<8.0a0

• r-base >=3.6,<3.7.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pchicdata

and update with:

conda update bioconductor-pchicdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pchicdata:<tag>

(see bioconductor-pchicdata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pchicdata/README.html)