recipe bioconductor-pcxn

Exploring, analyzing and visualizing functions utilizing the pcxnData package

Homepage

https://bioconductor.org/packages/3.11/bioc/html/pcxn.html

License

MIT + file LICENSE

Recipe

/bioconductor-pcxn/meta.yaml

Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections (MSigDB H hallmark, MSigDB C2 Canonical pathways, MSigDB C5 GO BP and Pathprint).

package bioconductor-pcxn

(downloads) docker_bioconductor-pcxn

Versions

2.10.0-02.8.0-12.6.0-12.6.0-02.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pcxn

and update with:

conda update bioconductor-pcxn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pcxn:<tag>

(see bioconductor-pcxn/tags for valid values for <tag>)