Package Recipe 'bioconductor-pcxndata'

recipe bioconductor-pcxndata

Correlation coefficients and p values between pre-defined pathway/gene sets

Homepage:: https://bioconductor.org/packages/3.16/data/experiment/html/pcxnData.html
License:: MIT + file LICENSE
Recipe:: /bioconductor-pcxndata/meta.yaml

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively, as well as adjusted pathway correlations to account for the shared genes between pathway pairs.

package bioconductor-pcxndata¶

Versions:

2.19.0-0, 2.16.0-1, 2.16.0-0, 2.14.0-0, 2.12.0-2, 2.12.0-1, 2.12.0-0, 2.11.0-0, 2.10.0-0,

2.19.0-0, 2.16.0-1, 2.16.0-0, 2.14.0-0, 2.12.0-2, 2.12.0-1, 2.12.0-0, 2.11.0-0, 2.10.0-0, 2.8.0-0, 2.6.0-1, 2.6.0-0, 2.4.0-0

Depends:

bioconductor-data-packages >=20221103
curl
r-base >=4.2,<4.3.0a0

Required By:

bioconductor-pcxn

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pcxndata

and update with:

conda update bioconductor-pcxndata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pcxndata:<tag>

(see bioconductor-pcxndata/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pcxndata/README.html)