-
recipe
bioconductor-pdinfobuilder
Platform Design Information Package Builder
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/pdInfoBuilder.html
- License
Artistic-2.0
- Recipe
- Links
biotools: pdinfobuilder, doi: 10.1093/bioinformatics/btq431
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
-
package
bioconductor-pdinfobuilder
¶ -
- Versions
1.54.0-0
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.46.0-0
,1.44.0-0
,1.42.0-0
- Depends
bioconductor-affxparser
>=1.62.0,<1.63.0
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biostrings
>=2.58.0,<2.59.0
bioconductor-iranges
>=2.24.0,<2.25.0
bioconductor-oligo
>=1.54.0,<1.55.0
bioconductor-oligoclasses
>=1.52.0,<1.53.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.0,<4.1.0a0
r-dbi
>=0.3.1
r-rsqlite
>=1.0.0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-pdinfobuilder
and update with:
conda update bioconductor-pdinfobuilder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pdinfobuilder:<tag>
(see bioconductor-pdinfobuilder/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pdinfobuilder/README.html)