recipe bioconductor-pdinfobuilder

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/pdInfoBuilder.html

License

Artistic-2.0

Recipe

/bioconductor-pdinfobuilder/meta.yaml

Links

biotools: pdinfobuilder, doi: 10.1093/bioinformatics/btq431

package bioconductor-pdinfobuilder

Versions

1.46.0-0, 1.44.0-0, 1.42.0-0

Depends

• bioconductor-affxparser >=1.54.0,<1.55.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-oligo >=1.46.0,<1.47.0

• bioconductor-oligoclasses >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• libgcc-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-dbi >=0.3.1

• r-rsqlite >=1.0.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pdinfobuilder

and update with:

conda update bioconductor-pdinfobuilder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pdinfobuilder:<tag>

(see bioconductor-pdinfobuilder/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pdinfobuilder/README.html)