recipe bioconductor-pdinfobuilder

Platform Design Information Package Builder

Homepage

https://bioconductor.org/packages/3.12/bioc/html/pdInfoBuilder.html

License

Artistic-2.0

Recipe

/bioconductor-pdinfobuilder/meta.yaml

Links

biotools: pdinfobuilder, doi: 10.1093/bioinformatics/btq431

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

package bioconductor-pdinfobuilder

Versions

1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-0

Depends

• bioconductor-affxparser >=1.62.0,<1.63.0

• bioconductor-biobase >=2.50.0,<2.51.0

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-biostrings >=2.58.0,<2.59.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-oligo >=1.54.0,<1.55.0

• bioconductor-oligoclasses >=1.52.0,<1.53.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.0,<4.1.0a0

• r-dbi >=0.3.1

• r-rsqlite >=1.0.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pdinfobuilder

and update with:

conda update bioconductor-pdinfobuilder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pdinfobuilder:<tag>

(see bioconductor-pdinfobuilder/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pdinfobuilder/README.html)