recipe bioconductor-pdinfobuilder

Platform Design Information Package Builder

Homepage

https://bioconductor.org/packages/3.13/bioc/html/pdInfoBuilder.html

License

Artistic-2.0

Recipe

/bioconductor-pdinfobuilder/meta.yaml

Links

biotools: pdinfobuilder, doi: 10.1093/bioinformatics/btq431

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

package bioconductor-pdinfobuilder

Versions

1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-0

Depends

• bioconductor-affxparser >=1.64.0,<1.65.0

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-oligo >=1.56.0,<1.57.0

• bioconductor-oligoclasses >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-dbi >=0.3.1

• r-rsqlite >=1.0.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pdinfobuilder

and update with:

conda update bioconductor-pdinfobuilder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pdinfobuilder:<tag>

(see bioconductor-pdinfobuilder/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pdinfobuilder/README.html)