- recipe bioconductor-peco
A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data
- Homepage:
- License:
GPL (>= 3)
- Recipe:
Our approach provides a way to assign continuous cell cycle phase using scRNA-seq data, and consequently, allows to identify cyclic trend of gene expression levels along the cell cycle. This package provides method and training data, which includes scRNA-seq data collected from 6 individual cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell cycle phase derived from FUCCI fluorescence imaging data.
- package bioconductor-peco¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-scater
>=1.26.0,<1.27.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-genlasso
>=1.4
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-peco
and update with:
conda update bioconductor-peco
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-peco:<tag>
(see bioconductor-peco/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-peco/README.html)