recipe bioconductor-peco

A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression using scRNA-seq data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/peco.html

License

GPL (>= 3)

Recipe

/bioconductor-peco/meta.yaml

Our approach provides a way to assign continuous cell cycle phase using scRNA-seq data, and consequently, allows to identify cyclic trend of gene expression levels along the cell cycle. This package provides method and training data, which includes scRNA-seq data collected from 6 individual cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell cycle phase derived from FUCCI fluorescence imaging data.

package bioconductor-peco

(downloads) docker_bioconductor-peco

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-peco

and update with:

conda update bioconductor-peco

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-peco:<tag>

(see bioconductor-peco/tags for valid values for <tag>)