recipe bioconductor-pedixplorer

Pedigree Functions

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/Pedixplorer.html

License:

Artistic-2.0

Recipe:

/bioconductor-pedixplorer/meta.yaml

Routines to handle family data with a Pedigree object. The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for Pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the Pedigree object with various criteria, and kinship for the X chromosome.

package bioconductor-pedixplorer

versions:

1.2.0-0

depends bioconductor-s4vectors:

>=0.44.0,<0.45.0

depends r-base:

>=4.4,<4.5.0a0

depends r-colourpicker:

depends r-data.table:

depends r-dplyr:

depends r-dt:

depends r-ggplot2:

depends r-gridextra:

depends r-htmlwidgets:

depends r-matrix:

depends r-plotly:

depends r-plyr:

depends r-quadprog:

depends r-readxl:

depends r-scales:

depends r-shiny:

depends r-shinycssloaders:

depends r-shinytoastr:

depends r-shinywidgets:

depends r-stringr:

depends r-tidyr:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-pedixplorer

and update with::

   mamba update bioconductor-pedixplorer

To create a new environment, run:

mamba create --name myenvname bioconductor-pedixplorer

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-pedixplorer:<tag>

(see `bioconductor-pedixplorer/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

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