recipe bioconductor-pepdat

Peptide microarray data package

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/pepDat.html

License:

Artistic-2.0

Recipe:

/bioconductor-pepdat/meta.yaml

Provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.

package bioconductor-pepdat

versions:

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0, 

1.26.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-genomicranges:

>=1.58.0,<1.59.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-pepdat

and update with::

   mamba update bioconductor-pepdat

To create a new environment, run:

mamba create --name myenvname bioconductor-pepdat

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-pepdat:<tag>

(see `bioconductor-pepdat/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pepdat/README.html)