recipe bioconductor-pepxmltab

Parsing pepXML files and filter based on peptide FDR.

Homepage

https://bioconductor.org/packages/3.11/bioc/html/pepXMLTab.html

License

Artistic-2.0

Recipe

/bioconductor-pepxmltab/meta.yaml

Links

biotools: pepxmltab, doi: 10.1038/nmeth.3252

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

package bioconductor-pepxmltab

(downloads) docker_bioconductor-pepxmltab

Versions

1.22.0-01.20.0-01.18.0-11.18.0-01.16.1-01.14.0-01.12.0-01.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pepxmltab

and update with:

conda update bioconductor-pepxmltab

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pepxmltab:<tag>

(see bioconductor-pepxmltab/tags for valid values for <tag>)