- recipe bioconductor-pepxmltab
Parsing pepXML files and filter based on peptide FDR.
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/pepXMLTab.html
- License:
Artistic-2.0
- Recipe:
- Links:
biotools: pepxmltab, doi: 10.1038/nmeth.3252
Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.
- package bioconductor-pepxmltab¶
-
- Versions:
1.32.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.32.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-pepxmltab
and update with:
conda update bioconductor-pepxmltab
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pepxmltab:<tag>
(see bioconductor-pepxmltab/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pepxmltab/README.html)