recipe bioconductor-pepxmltab

Parsing pepXML files and filter based on peptide FDR.

Homepage

https://bioconductor.org/packages/3.11/bioc/html/pepXMLTab.html

License

Artistic-2.0

Recipe

/bioconductor-pepxmltab/meta.yaml

Links

biotools: pepxmltab, doi: 10.1038/nmeth.3252

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

package bioconductor-pepxmltab

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-xml >=3.98-1.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pepxmltab

and update with:

conda update bioconductor-pepxmltab

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pepxmltab:<tag>

(see bioconductor-pepxmltab/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pepxmltab/README.html)