recipe bioconductor-periodicdna

Set of tools to identify periodic occurrences of k-mers in DNA sequences

Homepage

https://bioconductor.org/packages/3.13/bioc/html/periodicDNA.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-periodicdna/meta.yaml

This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.

package bioconductor-periodicdna

(downloads) docker_bioconductor-periodicdna

Versions

1.2.0-01.0.0-21.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-periodicdna

and update with:

conda update bioconductor-periodicdna

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-periodicdna:<tag>

(see bioconductor-periodicdna/tags for valid values for <tag>)

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