recipe bioconductor-pfp

Pathway Fingerprint Framework in R

Homepage

https://bioconductor.org/packages/3.14/bioc/html/PFP.html

License

GPL-2

Recipe

/bioconductor-pfp/meta.yaml

An implementation of the pathway fingerprint framework that introduced in paper "Pathway Fingerprint: a novel pathway knowledge and topology based method for biomarker discovery and characterization". This method provides a systematic comparisons between a gene set (such as a list of differentially expressed genes) and well-studied "basic pathway networks" (KEGG pathways), measuring the importance of pathways and genes for the gene set. The package is helpful for researchers to find the biomarkers and its function.

package bioconductor-pfp

(downloads) docker_bioconductor-pfp

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pfp

and update with:

conda update bioconductor-pfp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pfp:<tag>

(see bioconductor-pfp/tags for valid values for <tag>)

Download stats