recipe bioconductor-phastcons100way.ucsc.hg19

UCSC phastCons conservation scores for hg19

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/phastCons100way.UCSC.hg19.html

License:

Artistic-2.0

Recipe:

/bioconductor-phastcons100way.ucsc.hg19/meta.yaml

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

package bioconductor-phastcons100way.ucsc.hg19

Versions:

3.7.2-12,  3.7.2-11,  3.7.2-10,  3.7.2-9,  3.7.2-8,  3.7.2-7,  3.7.2-6,  3.7.2-5,  3.7.2-4, 

3.7.2-12,  3.7.2-11,  3.7.2-10,  3.7.2-9,  3.7.2-8,  3.7.2-7,  3.7.2-6,  3.7.2-5,  3.7.2-4,  3.7.2-2,  3.7.2-1,  3.7.2-0,  3.6.0-0

Depends:

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-data-packages >=20221103

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-genomicscores >=2.10.0,<2.11.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-rarevariantvis

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-phastcons100way.ucsc.hg19

and update with:

conda update bioconductor-phastcons100way.ucsc.hg19

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phastcons100way.ucsc.hg19:<tag>

(see bioconductor-phastcons100way.ucsc.hg19/tags for valid values for <tag>)

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