- recipe bioconductor-phipdata
Container for PhIP-Seq Experiments
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/PhIPData.html
- License:
MIT + file LICENSE
- Recipe:
PhIPData defines an S4 class for phage-immunoprecipitation sequencing (PhIP-seq) experiments. Buliding upon the RangedSummarizedExperiment class, PhIPData enables users to coordinate metadata with experimental data in analyses. Additionally, PhIPData provides specialized methods to subset and identify beads-only samples, subset objects using virus aliases, and use existing peptide libraries to populate object parameters.
- package bioconductor-phipdata¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocfilecache
>=2.6.0,<2.7.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-phipdata
and update with:
conda update bioconductor-phipdata
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-phipdata:<tag>
(see bioconductor-phipdata/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-phipdata/README.html)