- recipe bioconductor-phosr
A set of methods and tools for comprehensive analysis of phosphoproteomics data
- Homepage
- License
GPL-3 + file LICENSE
- Recipe
PhosR is a package for the comprenhensive analysis of phosphoproteomic data. There are two major components to PhosR: processing and downstream analysis. PhosR consists of various processing tools for phosphoproteomics data including filtering, imputation, normalisation, and functional analysis for inferring active kinases and signalling pathways.
- package bioconductor-phosr¶
-
- Versions
1.4.0-0
,1.2.0-0
,1.0.0-2
,1.0.0-1
- Depends
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-pcamethods
>=1.86.0,<1.87.0
bioconductor-preprocesscore
>=1.56.0,<1.57.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-phosr
and update with:
conda update bioconductor-phosr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-phosr:<tag>
(see bioconductor-phosr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-phosr/README.html)