recipe bioconductor-phosr

A set of methods and tools for comprehensive analysis of phosphoproteomics data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/PhosR.html

License

GPL-3 + file LICENSE

Recipe

/bioconductor-phosr/meta.yaml

PhosR is a package for the comprenhensive analysis of phosphoproteomic data. There are two major components to PhosR: processing and downstream analysis. PhosR consists of various processing tools for phosphoproteomics data including filtering, imputation, normalisation, and functional analysis for inferring active kinases and signalling pathways.

package bioconductor-phosr

Versions

1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-pcamethods >=1.86.0,<1.87.0

• bioconductor-preprocesscore >=1.56.0,<1.57.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-circlize

• r-dendextend

• r-dplyr

• r-e1071

• r-ggally

• r-ggdendro

• r-ggplot2

• r-ggpubr

• r-ggtext

• r-igraph

• r-network

• r-pheatmap

• r-rcolorbrewer

• r-reshape2

• r-rlang

• r-ruv

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phosr

and update with:

conda update bioconductor-phosr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phosr:<tag>

(see bioconductor-phosr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-phosr/README.html)