recipe bioconductor-phyloseq

phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/phyloseq.html

License

AGPL-3

Recipe

/bioconductor-phyloseq/meta.yaml

Links

biotools: phyloseq

package bioconductor-phyloseq

(downloads) docker_bioconductor-phyloseq

Versions

1.26.1-0, 1.26.0-0, 1.24.2-0, 1.22.3-0, 1.20.0-1, 1.20.0-0, 1.19.1-0, 1.16.2-1, 1.14.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biomformat

>=1.10.0,<1.11.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends r-ade4

>=1.7.4

Depends r-ape

>=5.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-cluster

>=2.0.4

Depends r-data.table

>=1.10.4

Depends r-foreach

>=1.4.3

Depends r-ggplot2

>=2.1.0

Depends r-igraph

>=1.0.1

Depends r-plyr

>=1.8.3

Depends r-reshape2

>=1.4.1

Depends r-scales

>=0.4.0

Depends r-vegan

>=2.5

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phyloseq

and update with:

conda update bioconductor-phyloseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phyloseq:<tag>

(see bioconductor-phyloseq/tags for valid values for <tag>)