recipe bioconductor-piano

Platform for integrative analysis of omics data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/piano.html

License:

GPL (>=2)

Recipe:

/bioconductor-piano/meta.yaml

Links:

biotools: piano

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

package bioconductor-piano

Versions:

2.14.0-0,  2.10.0-0,  2.8.0-0,  2.6.0-1,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.2-0,  1.22.0-0, 

2.14.0-0,  2.10.0-0,  2.8.0-0,  2.6.0-1,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.2-0,  1.22.0-0,  1.20.1-0,  1.18.0-0,  1.16.4-0,  1.12.1-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-marray >=1.76.0,<1.77.0

• r-base >=4.2,<4.3.0a0

• r-dt

• r-gplots

• r-htmlwidgets

• r-igraph

• r-relations

• r-scales

• r-shiny

• r-shinydashboard

• r-shinyjs

• r-visnetwork

Required By:

• bioconductor-pdatk

• bioconductor-coregx

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-piano

and update with:

conda update bioconductor-piano

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-piano:<tag>

(see bioconductor-piano/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-piano/README.html)