recipe bioconductor-pipecomp

pipeComp pipeline benchmarking framework

Homepage

https://bioconductor.org/packages/3.14/bioc/html/pipeComp.html

License

GPL

Recipe

/bioconductor-pipecomp/meta.yaml

A simple framework to facilitate the comparison of pipelines involving various steps and parameters. The `pipelineDefinition` class represents pipelines as, minimally, a set of functions consecutively executed on the output of the previous one, and optionally accompanied by step-wise evaluation and aggregation functions. Given such an object, a set of alternative parameters/methods, and benchmark datasets, the `runPipeline` function then proceeds through all combinations arguments, avoiding recomputing the same step twice and compiling evaluations on the fly to avoid storing potentially large intermediate data.

package bioconductor-pipecomp

(downloads) docker_bioconductor-pipecomp

Versions

1.4.0-01.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pipecomp

and update with:

conda update bioconductor-pipecomp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pipecomp:<tag>

(see bioconductor-pipecomp/tags for valid values for <tag>)

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