recipe bioconductor-polyester

Simulate RNA-seq reads

Homepage

https://bioconductor.org/packages/3.10/bioc/html/polyester.html

License

Artistic-2.0

Recipe

/bioconductor-polyester/meta.yaml

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

package bioconductor-polyester

Versions

1.22.0-0, 1.20.0-1, 1.18.0-0

Depends

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-zlibbioc >=1.32.0,<1.33.0

• r-base >=3.6,<3.7.0a0

• r-logspline

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-polyester

and update with:

conda update bioconductor-polyester

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-polyester:<tag>

(see bioconductor-polyester/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-polyester/README.html)