recipe bioconductor-polyester

Simulate RNA-seq reads

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/polyester.html

License:

Artistic-2.0

Recipe:

/bioconductor-polyester/meta.yaml

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

package bioconductor-polyester

versions:

1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0, 

1.38.0-0,  1.36.0-0,  1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0

depends bioconductor-biostrings:

>=2.70.0,<2.71.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-zlibbioc:

>=1.48.0,<1.49.0

depends r-base:

>=4.3,<4.4.0a0

depends r-logspline:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-polyester

and update with::

   mamba update bioconductor-polyester

To create a new environment, run:

mamba create --name myenvname bioconductor-polyester

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-polyester:<tag>

(see `bioconductor-polyester/tags`_ for valid values for ``<tag>``)

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Link to this page

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