- recipe bioconductor-pqsfinder
Identification of potential quadruplex forming sequences
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/pqsfinder.html
- License:
BSD_2_clause + file LICENSE
- Recipe:
- Links:
biotools: pqsfinder, doi: 10.1093/bioinformatics/btv272
Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.
- package bioconductor-pqsfinder¶
-
- Versions:
2.14.0-0
,2.10.1-1
,2.10.1-0
,2.10.0-0
,2.8.0-0
,2.6.0-1
,2.6.0-0
,2.4.0-0
,2.2.0-0
,2.14.0-0
,2.10.1-1
,2.10.1-0
,2.10.0-0
,2.8.0-0
,2.6.0-1
,2.6.0-0
,2.4.0-0
,2.2.0-0
,2.0.1-0
,1.10.0-0
,1.8.0-0
,1.6.3-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-bh
>=1.78.0
r-rcpp
>=0.12.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-pqsfinder
and update with:
conda update bioconductor-pqsfinder
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pqsfinder:<tag>
(see bioconductor-pqsfinder/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pqsfinder/README.html)