recipe bioconductor-prebsdata

Data for 'prebs' package






This package contains data required to run examples in 'prebs' package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie)

package bioconductor-prebsdata

(downloads) docker_bioconductor-prebsdata



depends bioconductor-data-packages:


depends curl:

depends r-base:




You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-prebsdata

and update with::

   mamba update bioconductor-prebsdata

To create a new environment, run:

mamba create --name myenvname bioconductor-prebsdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-prebsdata/tags`_ for valid values for ``<tag>``)

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