recipe bioconductor-props

PRObabilistic Pathway Score (PROPS)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PROPS.html

License:

GPL-2

Recipe:

/bioconductor-props/meta.yaml

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

package bioconductor-props

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-sva >=3.46.0,<3.47.0

• r-base >=4.2,<4.3.0a0

• r-bnlearn

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-props

and update with:

conda update bioconductor-props

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-props:<tag>

(see bioconductor-props/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-props/README.html)