recipe bioconductor-psichomics

Interactive R package with an intuitive Shiny-based graphical interface for alternative splicing quantification and integrative analyses of alternative splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression project (GTEx), Sequence Read Archive (SRA) and user-provided data. The tool interactively performs survival, dimensionality reduction and median- and variance-based differential splicing and gene expression analyses that benefit from the incorporation of clinical and molecular sample-associated features (such as tumour stage or survival). Interactive visual access to genomic mapping and functional annotation of selected alternative splicing events is also included.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/psichomics.html

License

MIT + file LICENSE

Recipe

/bioconductor-psichomics/meta.yaml

package bioconductor-psichomics

(downloads) docker_bioconductor-psichomics

Versions

1.8.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-psichomics

and update with:

conda update bioconductor-psichomics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-psichomics:<tag>

(see bioconductor-psichomics/tags for valid values for <tag>)