recipe bioconductor-pvac

PCA-based gene filtering for Affymetrix arrays

Homepage

https://bioconductor.org/packages/3.14/bioc/html/pvac.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-pvac/meta.yaml

Links

biotools: pvac, doi: 10.1093/nar/gkr241

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

package bioconductor-pvac

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0, 

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pvac

and update with:

conda update bioconductor-pvac

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pvac:<tag>

(see bioconductor-pvac/tags for valid values for <tag>)

Download stats

Link to this page

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