recipe bioconductor-pwmenrich

A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform “de novo” motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/PWMEnrich.html

License

LGPL (>= 2)

Recipe

/bioconductor-pwmenrich/meta.yaml

Links

biotools: pwmenrich, doi: 10.1038/nmeth.3252

package bioconductor-pwmenrich

(downloads) docker_bioconductor-pwmenrich

Versions

4.18.0-0, 4.16.0-0, 4.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pwmenrich

and update with:

conda update bioconductor-pwmenrich

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pwmenrich:<tag>

(see bioconductor-pwmenrich/tags for valid values for <tag>)