- recipe bioconductor-pwmenrich
PWM enrichment analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/PWMEnrich.html
- License:
LGPL (>= 2)
- Recipe:
- Links:
biotools: pwmenrich, doi: 10.1038/nmeth.3252
A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.
- package bioconductor-pwmenrich¶
-
- Versions:
4.34.0-0
,4.30.0-0
,4.28.1-0
,4.26.0-1
,4.26.0-0
,4.23.0-0
,4.22.0-0
,4.20.0-1
,4.18.0-0
,4.34.0-0
,4.30.0-0
,4.28.1-0
,4.26.0-1
,4.26.0-0
,4.23.0-0
,4.22.0-0
,4.20.0-1
,4.18.0-0
,4.16.0-0
,4.14.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-seqlogo
>=1.64.0,<1.65.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-pwmenrich
and update with:
conda update bioconductor-pwmenrich
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pwmenrich:<tag>
(see bioconductor-pwmenrich/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pwmenrich/README.html)