recipe bioconductor-pwmenrich

PWM enrichment analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PWMEnrich.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-pwmenrich/meta.yaml

Links:

biotools: pwmenrich, doi: 10.1038/nmeth.3252

A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.

package bioconductor-pwmenrich

Versions:

4.34.0-0,  4.30.0-0,  4.28.1-0,  4.26.0-1,  4.26.0-0,  4.23.0-0,  4.22.0-0,  4.20.0-1,  4.18.0-0, 

4.34.0-0,  4.30.0-0,  4.28.1-0,  4.26.0-1,  4.26.0-0,  4.23.0-0,  4.22.0-0,  4.20.0-1,  4.18.0-0,  4.16.0-0,  4.14.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-seqlogo >=1.64.0,<1.65.0

• r-base >=4.2,<4.3.0a0

• r-evd

• r-gdata

Required By:

• bioconductor-pwmenrich.mmusculus.background

• bioconductor-pwmenrich.hsapiens.background

• bioconductor-pwmenrich.dmelanogaster.background

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pwmenrich

and update with:

conda update bioconductor-pwmenrich

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pwmenrich:<tag>

(see bioconductor-pwmenrich/tags for valid values for <tag>)

Download stats

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