recipe bioconductor-qmtools

Quantitative Metabolomics Data Processing Tools

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/qmtools.html

License:

GPL-3

Recipe:

/bioconductor-qmtools/meta.yaml

The qmtools (quantitative metabolomics tools) package provides basic tools for processing quantitative metabolomics data with the standard SummarizedExperiment class. This includes functions for imputation, normalization, feature filtering, feature clustering, dimension-reduction, and visualization to help users prepare data for statistical analysis. Several functions in this package could also be used in other types of omics data.

package bioconductor-qmtools

Versions:

1.2.0-0

Depends:

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-heatmaply

• r-igraph

• r-patchwork

• r-rlang

• r-scales

• r-vim

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-qmtools

and update with:

conda update bioconductor-qmtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qmtools:<tag>

(see bioconductor-qmtools/tags for valid values for <tag>)

Download stats

Link to this page

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