recipe bioconductor-qsea

IP-seq data analysis and vizualization

Homepage

https://bioconductor.org/packages/3.11/bioc/html/qsea.html

License

GPL (>=2)

Recipe

/bioconductor-qsea/meta.yaml

Links

biotools: qsea

qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.

package bioconductor-qsea

(downloads) docker_bioconductor-qsea

Versions

1.14.0-01.12.0-01.10.0-11.8.0-01.6.0-01.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qsea

and update with:

conda update bioconductor-qsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qsea:<tag>

(see bioconductor-qsea/tags for valid values for <tag>)