recipe bioconductor-qsutils

Set of utility functions for viral quasispecies analysis with NGS data. Most functions are equally useful for metagenomic studies. There are three main types: (1) data manipulation and exploration—functions useful for converting reads to haplotypes and frequencies, repairing reads, intersecting strand haplotypes, and visualizing haplotype alignments. (2) diversity indices—functions to compute diversity and entropy, in which incidence, abundance, and functional indices are considered. (3) data simulation—functions useful for generating random viral quasispecies data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/QSutils.html

License

file LICENSE

Recipe

/bioconductor-qsutils/meta.yaml

package bioconductor-qsutils

(downloads) docker_bioconductor-qsutils

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qsutils

and update with:

conda update bioconductor-qsutils

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qsutils:<tag>

(see bioconductor-qsutils/tags for valid values for <tag>)