recipe bioconductor-r3cpet

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/R3CPET.html

License:

GPL (>=2)

Recipe:

/bioconductor-r3cpet/meta.yaml

The package provides a method to infer the set of proteins that are more probably to work together to maintain chormatin interaction given a ChIA-PET experiment results.

package bioconductor-r3cpet

Versions:

1.26.0-3,  1.26.0-2,  1.26.0-1,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1, 

1.26.0-3,  1.26.0-2,  1.26.0-1,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0

Depends:

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-ggbio >=1.42.0,<1.43.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.1,<4.2.0a0

• r-clvalid

• r-data.table

• r-ggplot2

• r-hmisc

• r-igraph

• r-pheatmap

• r-rcpp >=0.10.4

• r-rcurl

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-r3cpet

and update with:

conda update bioconductor-r3cpet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-r3cpet:<tag>

(see bioconductor-r3cpet/tags for valid values for <tag>)

Download stats

Link to this page

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