recipe bioconductor-r3cseq

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/r3Cseq.html

License:

GPL-3

Recipe:

/bioconductor-r3cseq/meta.yaml

Links:

biotools: r3cseq, doi: 10.1093/nar/gkt373

This package is used for the analysis of long-range chromatin interactions from 3C-seq assay.

package bioconductor-r3cseq

Versions:

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0, 

1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.34.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-qvalue >=2.30.0,<2.31.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-rcolorbrewer

• r-sqldf

• r-vgam

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-r3cseq

and update with:

conda update bioconductor-r3cseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-r3cseq:<tag>

(see bioconductor-r3cseq/tags for valid values for <tag>)

Download stats

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