recipe bioconductor-raggedexperiment

Representation of Sparse Experiments and Assays Across Samples

Homepage

https://bioconductor.org/packages/3.11/bioc/html/RaggedExperiment.html

License

Artistic-2.0

Recipe

/bioconductor-raggedexperiment/meta.yaml

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.

package bioconductor-raggedexperiment

Versions

1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0

Depends

• bioconductor-biocgenerics >=0.34.0,<0.35.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-omicsprint

• bioconductor-cbioportaldata

• bioconductor-rtcgatoolbox

• bioconductor-txreginfra

• bioconductor-cnvranger

• bioconductor-tcgautils

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-raggedexperiment

and update with:

conda update bioconductor-raggedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-raggedexperiment:<tag>

(see bioconductor-raggedexperiment/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-raggedexperiment/README.html)