recipe bioconductor-raggedexperiment

Representation of Sparse Experiments and Assays Across Samples

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RaggedExperiment.html

License:

Artistic-2.0

Recipe:

/bioconductor-raggedexperiment/meta.yaml

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns. The RaggedExperiment class derives from a GRangesList representation and provides a semblance of a rectangular dataset.

package bioconductor-raggedexperiment

Versions:

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0, 

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-matrixgenerics >=1.10.0,<1.11.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-matrix

Required By:

• bioconductor-cnvranger

• bioconductor-compartmap

• bioconductor-cbioportaldata

• bioconductor-terratcgadata

• bioconductor-rtcgatoolbox

• bioconductor-omicsprint

• bioconductor-tcgautils

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-raggedexperiment

and update with:

conda update bioconductor-raggedexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-raggedexperiment:<tag>

(see bioconductor-raggedexperiment/tags for valid values for <tag>)

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