recipe bioconductor-ramr

Detection of Rare Aberrantly Methylated Regions in Array and NGS Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ramr.html

License:

Artistic-2.0

Recipe:

/bioconductor-ramr/meta.yaml

ramr is an R package for detection of low-frequency aberrant methylation events in large data sets obtained by methylation profiling using array or high-throughput bisulfite sequencing. In addition, package provides functions to visualize found aberrantly methylated regions (AMRs), to generate sets of all possible regions to be used as reference sets for enrichment analysis, and to generate biologically relevant test data sets for performance evaluation of AMR/DMR search algorithms.

package bioconductor-ramr

Versions:

1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-doparallel

• r-dorng

• r-envstats

• r-extdist

• r-foreach

• r-ggplot2

• r-matrixstats

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ramr

and update with:

conda update bioconductor-ramr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ramr:<tag>

(see bioconductor-ramr/tags for valid values for <tag>)

Download stats

Link to this page

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