recipe bioconductor-rawdiag

Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/rawDiag.html

License:

GPL-3

Recipe:

/bioconductor-rawdiag/meta.yaml

Optimizing methods for liquid chromatography coupled to mass spectrometry (LC-MS) poses a nontrivial challenge. The rawDiag package facilitates rational method optimization by generating MS operator-tailored diagnostic plots of scan-level metadata. The package is designed for use on the R shell or as a Shiny application on the Orbitrap instrument PC.

package bioconductor-rawdiag

versions:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-rawdiag

and update with::

   mamba update bioconductor-rawdiag

To create a new environment, run:

mamba create --name myenvname bioconductor-rawdiag

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-rawdiag:<tag>

(see `bioconductor-rawdiag/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rawdiag/README.html)