recipe bioconductor-rbec

Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Rbec.html

License:

LGPL-3

Recipe:

/bioconductor-rbec/meta.yaml

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

package bioconductor-rbec

Versions:

1.6.0-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-dada2 >=1.26.0,<1.27.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-doparallel

• r-foreach

• r-ggplot2

• r-rcpp >=1.0.6

• r-readr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rbec

and update with:

conda update bioconductor-rbec

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rbec:<tag>

(see bioconductor-rbec/tags for valid values for <tag>)

Download stats

Link to this page

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