- recipe bioconductor-rbec
Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities
- Homepage:
- License:
LGPL-3
- Recipe:
Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.
- package bioconductor-rbec¶
-
- Versions:
1.6.0-0
,1.2.0-2
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-dada2
>=1.26.0,<1.27.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
r-rcpp
>=1.0.6
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rbec
and update with:
conda update bioconductor-rbec
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rbec:<tag>
(see bioconductor-rbec/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rbec/README.html)