recipe bioconductor-rbowtie

R bowtie wrapper

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/Rbowtie.html

License:

Artistic-2.0 | file LICENSE

Recipe:

/bioconductor-rbowtie/meta.yaml

Links:

biotools: rbowtie, doi: 10.1038/nmeth.3252

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

package bioconductor-rbowtie

Versions:

1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1, 

1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-2,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends:

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

Required By:

• bioconductor-macpet

• bioconductor-quasr

• bioconductor-multicrispr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rbowtie

and update with:

conda update bioconductor-rbowtie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rbowtie:<tag>

(see bioconductor-rbowtie/tags for valid values for <tag>)

Download stats

Link to this page

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