- recipe bioconductor-rbowtie
R bowtie wrapper
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/Rbowtie.html
- License:
Artistic-2.0 | file LICENSE
- Recipe:
- Links:
biotools: rbowtie, doi: 10.1038/nmeth.3252
This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.
- package bioconductor-rbowtie¶
-
- Versions:
1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-2
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-2
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-0
- Depends:
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rbowtie
and update with:
conda update bioconductor-rbowtie
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rbowtie:<tag>
(see bioconductor-rbowtie/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rbowtie/README.html)